BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB008A12SP1|AL425801
(791 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig632 1278 0.0
>3x_Contig632
Length = 1788
Score = 1278 bits (632), Expect = 0.0
Identities = 732/781 (93%), Gaps = 2/781 (0%)
Strand = Plus / Plus
Query: 1 gatctgatgatatcacaatcggtaacgacaaatccataattacagaatcgtctcatactg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 gatctgatgatatcacaatcggtaacgacaaatccataattacagaatcgtctcatactg 336
Query: 61 acatatcgatgtttgcagckgctactgctaccgcagtaaaacaccactatttcaggtggt 120
||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct: 337 acatatcgatgtttgcagctgctactgctaccgcag-aaaacaccactatttcaggtggt 395
Query: 121 agcaataaattcccatcgtttgagacctcgtttacaaaccaactacaggaacagatttat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 agcaataaattcccatcgtttgagacctcgtttacaaaccaactacaggaacagatttat 455
Query: 181 cactccgtkatgaacttcagtaatgaattkacaagaaagatctcgttaattaacggtgag 240
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 456 cactccgtgatgaacttcagtaatgaattgacaagaaagatctcgttaattaacggtgag 515
Query: 241 atgaacaaaaaaattatyaacgaattatctgagaaatacaaaacaatgttcaaagagctt 300
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 atgaacaaaaaaattattaacgaattatctgagaaatacaaaacaatgttcaaagagctt 575
Query: 301 cagtccagtttccagaacgacgtggnaaaagattactgggttcgttggtgaaatcaaaga 360
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 576 cagtccagtttccagaacgacgtgg-aaaagattactgggttcgttggtgaaatcaaaga 634
Query: 361 tatgttacatcttccagaagaagcactagttaaactcataagagacaaacaattccantc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 635 tatgttacatcttccagaagaagcactagttaaactcataagagacaaacaattccattc 694
Query: 421 ctaatctccctgcagaatggccnnaaatatatttcacatgtgtctctcctcactttcaac 480
|||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 695 ttaatctccttgcagaatggccttaaatatatttcacatgtgtctctcctcactttcaac 754
Query: 481 attcacctaaatagctaanaaatatagnncagaccangaanaagnctttacatgtatatm 540
|||||||||||||||||| |||||||| ||||||| ||| ||| ||||||||||||||
Sbjct: 755 attcacctaaatagctaataaatatagttcagaccatgaataagtctttacatgtatata 814
Query: 541 aactcccacctagctttgtccttcatagtgtcagactggagcgackkttkctttakkaat 600
||||| ||||||||||||||||||||||||||||||||||||||| | ||||| |||
Sbjct: 815 aactctcacctagctttgtccttcatagtgtcagactggagcgacggtggctttaggaat 874
Query: 601 tccktataatatkaycttktccaaacctacccaakckacatttccattttttcagttttt 660
||| |||||||| | ||| ||||||||||||||| | |||||||||||||||||||||||
Sbjct: 875 tccgtataatatgaccttgtccaaacctacccaagcgacatttccattttttcagttttt 934
Query: 661 ttttcattttttktatttttytcatctaaaacttttcaattaataaaaaaaatcttccwa 720
|||||||||||| ||| | | ||||| ||||||||||||| || |||||||| ||||| |
Sbjct: 935 ttttcattttttgtatgtgtctcatcgaaaacttttcaatgaagaaaaaaaagcttccaa 994
Query: 721 ttwwatatttwtcacattcaacatcacttctttacaattkaatattatatttattttttt 780
| |||||| ||||||||||||||||||| ||||||| |||| |||||||||| ||||
Sbjct: 995 tgaaatatttagcacattcaacatcacttctgtacaattgaatagtatatttattgtttt 1054
Query: 781 a 781
|
Sbjct: 1055 a 1055
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.40 0.715 1.33
Gapped
Lambda K H
1.40 0.715 1.33
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7343
Number of Sequences: 1807
Number of extensions: 7343
Number of successful extensions: 308
Number of sequences better than 1.0e-20: 1
length of query: 791
length of database: 10,358,551
effective HSP length: 16
effective length of query: 775
effective length of database: 10,329,639
effective search space: 8005470225
effective search space used: 8005470225
T: 0
A: 40
X1: 5 (10.1 bits)
X2: 14 (28.3 bits)
S1: 12 (24.7 bits)
S2: 49 (99.5 bits)